Chen (David) Lab

DNA Repair & Nuclear Organization

Deficiencies in DNA-damage signaling and repair pathways are fundamental to the etiology of most human cancers. Of the many types of DNA damage that occur within the cell, DNA double-strand breaks (DSBs) are particularly dangerous.

DSBs are caused by both endogenous (byproducts of cellular metabolism) and exogenous (ionizing radiation and chemotherapeutic drugs) threats. An inability to respond properly to DSBs or to repair them correctly can lead to cell death or promote tumorigenesis. Our research is focused on the mechanisms by which cells recognize, respond to, and repair DSBs. We are motivated by the fact that a more complete understanding of these pathways will provide insights into how cancer is triggered and may lead to the development of more effective cancer therapies.

    Eukaryotic cells have evolved two distinct mechanisms for repairing DSBs: homologous recombination (HR) and non-homologous end joining (NHEJ). These mechanisms differ primarily in that HR requires a homologous DNA template, while NHEJ acts independently of homologous DNA. We have begun to study how the Rad51 family of proteins interact and assemble to facilitate homologous recombinational repair (1). The majority of our research focuses on the NHEJ repair pathway. The DNA-dependent protein kinase (DNA-PK) complex, consisting of the DNA-binding subunit Ku and the catalytic subunit DNA-PKcs, is central to NHEJ repair. Utilizing transgenic mouse models (2, 3), we demonstrated that while the kinase activity of DNA-PKcs is essential for the repair of DNA DSBs (4), DNA-PKcs are not required for the signaling of DNA damage to the cell cycle machinery (5). Although it has been established for many years that the kinase activity of DNA-PK is stimulated by DNA damage, the biologically relevant substrates of DNA-PK have remained elusive. We have recently identified WRN as a biologically relevant substrate for DNA-PK.

    We have further shown that DNA-PK assembles into a complex on DNA with WRN protein and regulates WRN activities (6). WRN deficiency is causative in a human disease characterized by "premature aging" and an increased incidence of cancer. These studies suggest a link between DNA repair and aging processes. Very recently, we demonstrated that DNA-PKcs are autophosphorylated in response to DNA damage and that this very early event is essential for the repair of DSBs. In addition, we demonstrated, for the first time, the localization of DNA-PKcs at the sites of DNA damage in vivo (7).

    We are also investigating how some of the proteins involved in NHEJ control other processes such as telomere maintenance. Telomere maintenance is a critical component of cellular senescence, telomerase is activated in most cancers, and telomere dysfunction may be an early event causing genomic instability during the progression of certain cancers. Recently, we discovered that Ku is associated with the mammalian telomere and that Ku functions uniquely at the telomere to prevent end joining (8, 9). Using a transgenic mouse model we have recently determined that the DNA-PKcs kinase domain is critical for telomere capping (10) and we are in the process of identifying specific telomere proteins that are phosphorylated by DNA-PKcs in vivo. Ongoing research is directed toward dissecting the molecular functions of the kinase activity of DNA-PKcs and the biological significance of DNA-PKcs-mediated auto and trans-phosphorylation in mammalian cells.

    In addition to the study of DNA-PK-mediated phosphorylation events, we are also interested in understanding how a related kinase, ATM, functions in the response of mammalian cells to DNA damage. ATM, which is defective in the cancer-predisposition syndrome ataxia telangiectasia, functions in preventing cells with damaged DNA from dividing thereby allowing sufficient time for DNA repair. We have identified ATM as the kinase responsible for histone H2AX phosphorylation at the sites of DNA damage, a very early and important response to DSBs (11). Our current research focuses on how ATM is activated by ionizing radiation and we have identified the Ku component of DNA-PK as a modulator of the ATM-activation process.

    Meet the Principal Investigator

    David Chen, Ph.D.

    David Chen, Ph.D.

    David A. Pistenmaa, MD, Ph.D., Distinguished Professorship in Radiation Oncology

    Featured Publications

    Lio, Y. C., Mazin, A. V., Kowalczykowski, S. C., and Chen, D. J. Complex formation by the human Rad51B and Rad51C DNA repair proteins and their activities in vitro. J Biol Chem, 2002.

    Chan, D. W., Chen, B. P., Prithivirajsingh, S., Kurimasa, A., Story, M. D., Qin, J., and Chen, D. J. Autophosphorylation of the DNA-dependent protein kinase catalytic subunit is required for rejoining of DNA double-strand breaks. Genes Dev, 16: 2333-2338, 2002.

    Yannone, S. M., Roy, S., Chan, D. W., Murphy, M. B., Huang, S., Campisi, J., and Chen, D. J. Werner syndrome protein is regulated and phosphorylated by DNA-dependent protein kinase. J Biol Chem, 276: 38242-38248, 2001.

    Gilley, D., Tanaka, H., Hande, M. P., Kurimasa, A., Li, G. C., Oshimura, M., and Chen, D. J. DNA-PKcs is critical for telomere capping. Proc Natl Acad Sci U S A, 98: 15084-15088, 2001.

    Burma, S., Chen, B. P., Murphy, M., Kurimasa, A., and Chen, D. J. ATM phosphorylates histone H2AX in response to DNA double-strand breaks. J Biol Chem, 276: 42462-42467, 2001.


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