Publications for Josephine Ni, M.D.

Randomized controlled-feeding study of dietary emulsifier carboxymethylcellulose reveals detrimental impacts on the gut microbiota and metabolome
Chassaing B, Compher C, Bonhomme B, Liu Q, Tian Y, Walters W, Nessel L, Delaroque C, Hao F, Gershuni V, Chau L, Ni J, Bewtra M, Albenberg L, Bretin A, McKeever L, Ley RE, Patterson AD, Wu GD, Gewirtz AT, Lewis JD, Gastroenterology 2021 Nov

Risk for Post-Colonoscopy Irritable Bowel Syndrome in Patients With and Without Antibiotic Exposure: A Retrospective Cohort Study
Vajravelu RK, Shapiro JM, Ni J, Thanawala SU, Lewis JD, El-Serag HB, Clin Gastroenterol Hepatol 2021 Sep

Bacterial colonization reprograms the neonatal gut metabolome
Bittinger K, Zhao C, Li Y, Ford E, Friedman ES, Ni J, Kulkarni CV, Cai J, Tian Y, Liu Q, Patterson AD, Sarkar D, Chan SHJ, Maranas C, Saha-Shah A, Lund P, Garcia BA, Mattei LM, Gerber JS, Elovitz MA, Kelly A, DeRusso P, Kim D, Hofstaedter CE, Goulian M, Li H, Bushman FD, Zemel BS, Wu GD, Nat Microbiol 2020 06 5 6 838-847

A role for bacterial urease in gut dysbiosis and Crohn's disease
Ni J, Shen TD, Chen EZ, Bittinger K, Bailey A, Roggiani M, Sirota-Madi A, Friedman ES, Chau L, Lin A, Nissim I, Scott J, Lauder A, Hoffmann C, Rivas G, Albenberg L, Baldassano RN, Braun J, Xavier RJ, Clish CB, Yudkoff M, Li H, Goulian M, Bushman FD, Lewis JD, Wu GD Sci Transl Med 2017 Nov 9 416

Gut microbiota and IBD: causation or correlation?
Ni J, Wu GD, Albenberg L, Tomov VT, Nat Rev Gastroenterol Hepatol 2017 Oct 14 10 573-584

Improved Long-term Outcomes of Patients With Inflammatory Bowel Disease Receiving Proactive Compared With Reactive Monitoring of Serum Concentrations of Infliximab
Papamichael K, Chachu KA, Vajravelu RK, Vaughn BP, Ni J, Osterman MT, Cheifetz AS, Clin Gastroenterol Hepatol 2017 Oct 15 10 1580-1588.e3

Dietary Regulation of the Gut Microbiota Engineered by a Minimal Defined Bacterial Consortium
Shen TC, Chehoud C, Ni J, Hsu E, Chen YY, Bailey A, Laughlin A, Bittinger K, Bushman FD, Wu GD, PLoS One 2016 11 5 e0155620

Engineering the gut microbiota to treat hyperammonemia
Shen TC, Albenberg L, Bittinger K, Chehoud C, Chen YY, Judge CA, Chau L, Ni J, Sheng M, Lin A, Wilkins BJ, Buza EL, Lewis JD, Daikhin Y, Nissim I, Yudkoff M, Bushman FD, Wu GD, J Clin Invest 2015 Jul 125 7 2841-50

Intubation difficulties in a patient with an esophageal foreign body
Goudra BG, Kronish K, Wong S, Ni J, J Clin Anesth 2014 Mar 26 2 160-1