Publications

Featured Publications

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An evaluation of ambient artificial intelligence scribes at two academic medical centers

Franklin J, Chu L, McDonald S, Turer RW, Webb J, Steitz BD, Yi H, Chen Q, McCoy AB, Nall C, Chen C, Rousseau JF, Lehmann C, Willett DL, Kumah-Crystal YA, Mize DE 2026 Dec Discover Artificial Intelligence 6

Author Correction: Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors (Communications Medicine, (2026), 6, 1, (1), 10.1038/s43856-025-01230-w)

Author Collaboration IN, Doni Jayavelu N, Samaha H, Wimalasena ST, Hoch A, Gygi JP, Gabernet G, Ozonoff A, Liu S, Milliren CE, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Schaenman J, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuit NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Geng LN, Fernandez Sesma A, Simon V, Krammer F, Kraft M, Bime C, Calfee CS, Erle DJ, Langelier CR, Tipan PG, Rogers JE, Siles N, Geltman JN, Hurley KC, Rousseau JF, Wylie D, Maguire C, Anderson ML 2026 Dec Communications Medicine 6

Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors

Author Collaboration IN, Doni Jayavelu N, Samaha H, Wimalasena ST, Hoch A, Gygi JP, Gabernet G, Ozonoff A, Liu S, Milliren CE, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Schaenman J, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuit NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Gen LN, Fernandez Sesma A, Simon V, Krammer F, Kraft M, Bime C, Calfee CS, Erle DJ, Langelier CR, Tipan PG, Rogers JE, Siles N, Geltman JN, Hurley KC, Rousseau JF, Wylie D, Maguire C, Anderson ML 2026 Dec Communications Medicine 6

Use and Implications of the Fracture Risk Assessment Tool in Primary Hyperparathyroidism

Sant VR, ElNakieb Y, Rousseau JF, Liu YL, Rubin CD, Maalouf NM 2026 Mar JAMA Network Open 9

Exploring resource profiles among trauma exposed youth: An identity-focused, cultural, and person-centered approach

Onyeka O, Cheng JS, Sanei S, Clark SL, Pinciotti CM, Guzick AG, Storch EA, Stewart S, Sandoval JF, Taylor L, Riddle D, Garza C, Liberzon I, Rousseau J, Shahidullah JD, Newport DJ, Wagner KD, Nemeroff C 2026 Jan Journal of affective disorders 393

Validity of the PHQ-9A as a self-report screener for major depressive disorder in youth ages 10–12 years

Stewart SM, Sanei S, Abu-Samaha A, Emslie GJ, Rathouz PJ, Belford A, Garrett A, Shotwell J, Taylor LK, Rousseau JF, Shahidullah JD, Newport J, Wagner KD, Nemeroff CB 2026 Jan Journal of affective disorders 392

SDoH-GPT: using large language models to extract social determinants of health

Consoli B, Wang H, Wu X, Wang S, Zhao X, Wang Y, Rousseau J, Hartvigsen T, Shen L, Wu H, Peng Y, Long Q, Chen T, Ding Y 2026 Jan Journal of the American Medical Informatics Association 33 67-78

Crossover Evaluation of Two Ambient AI Scribe Tools in the Emergency Department

Webb J, Chu L, Turer RW, Chen C, Rousseau JF, Salter A, Courtney DM, Higashi RT, Guzman N, Chapman WW, Willett DW, McDonald S 2026 Jan Applied Clinical Informatics 17 118-126

History of interpersonal trauma exposure is a robust risk factor for alcohol and substance use disorders during adolescence

Leri J, Cisler JM, Clark SL, Garrett A, Taylor L, Loganathan M, Trinh A, Shahidullah JD, Rousseau JF, Rathouz PJ, Newport DJ, Wagner KD, Nemeroff CB 2026 Jan Journal of Psychiatric Research 192 302-311

Advancing delirium detection through the Open Health Natural Language Processing Consortium and the Evolve to Next-Gen Accrual to Clinical Trials Network

Fu S, Kwak MJ, Ahn J, Yue Z, Ranganath S, Applegate JR, Wen A, Wang L, Li C, Morris M, Toth KM, Girard TD, Osborne JD, Kennedy RE, Garduno-Rapp NE, Reeder P, Rousseau JF, Yan C, Chen Y, Patel MB, Murphy TJ, Malin BA, Park CM, Jia H, Pagali S, Palmer AK, Sauver JS, Sohn S, Bernstam EV, Visweswaran S, Wang Y, Liu H 2025 Dec Journals of Gerontology - Series A Biological Sciences and Medical Sciences 80

Dissecting clinical features of COVID-19 in a cohort of 21,312 acute care patients

Maguire C, Soloveichik E, Blinchevsky N, Miller J, Morrison R, Busch J, Michael Brode W, Wylie D, Rousseau J, Melamed E 2025 Dec Communications Medicine 5

Circulating endothelial signatures correlate with worse outcomes in COVID-19, respiratory failure and ARDS

Author Collaboration IN, Author Collaboration CS, Costa Monteiro AC, Pickering H, Sarma A, Taylor CS, Jenkins MM, Hsu FM, Nadel B, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Geng LN, Fernandez-Sesma A, Simon V, Krammer F, Kraft M, Bime C, Calfee CS, Erle DJ, Bosinger S, Eckalbar W, Maecker H, Rahman A, Guan L, Peters B, Kleinstein SH, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Tipan PG, Rousseau JF 2025 Dec Critical Care 29

SARS-CoV-2 humoral immune responses in convalescent individuals over 12 months reveal severity-dependent antibody dynamics

Siles Alvarado N, Schuler M, Maguire C, Amengor DA, Nguyen AW, Wilen RE, Rogers J, Bazzi S, Caslin B, DiPasquale C, Abigania M, Olson E, Creaturo J, Hurley K, Triplett TA, Rousseau JF, Strakowski SM, Wylie D, Maynard JA, Ehrlich LI, Melamed E 2025 Dec Communications Medicine 5

Leveraging long context in retrieval augmented language models for medical question answering

Zhang G, Xu Z, Jin Q, Chen F, Fang Y, Liu Y, Rousseau JF, Xu Z, Lu Z, Weng C, Peng Y 2025 Dec npj Digital Medicine 8

Host-microbe multiomic profiling identifies distinct COVID-19 immune dysregulation in solid organ transplant recipients

Author Collaboration IN, Pickering H, Schaenman J, Phan HV, Maguire C, Tsitsiklis A, Rouphael N, Higuita NI, Atkinson MA, Brakenridge S, Fung M, Messer W, Seyfert-Margolis V, Rahman A, Wong K, Michelotti G, Hutton SR, Overton JA, Nagle C, Sheidy J, Schearer P, Ulring K, Mege N, Rogowski B, Tegos GP, McLin R, Furukawa S, Bell MR, Semenza NC, Croen B, Martens M, Smith CM, Simmons B, Goonewardene IM, Kim JN, Powell DL, Melnyk N, Lin E, Lee E, Edwards C, Joyner D, Woloszczuk K, Connors J, Cusimano G, Bernui M, Kutzler MA, Haddad EK, Cairns CB, Ribeiro SP, Tribout H, Rousseau JF 2025 Dec Nature communications 16

Corrigendum to “Clinical characteristics and longitudinal associations with obsessive-compulsive disorder in youth exposed to trauma” [J Mood Anxiety Disord 10C (2025) 100117] (Journal of Mood and Anxiety Disorders (2025) 10, (S2950004425000148), (10.1016/j.xjmad.2025.100117))

Pinciotti CM, Rathouz PJ, Guzick AG, Shahidullah JD, Bivins EJ, Riddle DB, Onyeka O“, Storch EA, Goodman WK, Franco K, Rousseau JF, Newport DJ, Wagner KD, Nemeroff CB 2025 Dec Journal of Mood and Anxiety Disorders 12

A foundation model for human-AI collaboration in medical literature mining

Wang Z, Cao L, Jin Q, Chan J, Wan N, Afzali B, Cho HJ, Choi CI, Emamverdi M, Gill MK, Kim SH, Li Y, Liu Y, Luo Y, Ong H, Rousseau JF, Sheikh I, Wei JJ, Xu Z, Zallek CM, Kim K, Peng Y, Lu Z, Sun J 2025 Dec Nature communications 16

Factors associated with interpersonal retraumatization in children and adolescents: A prospective study

Jeevarajan JR, Newman S, Claassen CA, Theodorou A, Guerra M, Madia ND, Proch L, Olemgbe C, Siddiqui S, Mohammadi C, Farmer D, Rosenberg A, Ladd S, Ahumada N, Newport DJ, Shahidullah JD, Shotwell J, Richmond R, Nguyen M, Dieste S, Rush AJ, Rousseau JF, Wagner KD, Nemeroff CB 2025 Nov Psychiatry research 353

Type 2 immune responses are associated with less severe COVID-19 in a hospitalized cohort

Author Collaboration IN, Altman MC, Jayavelu ND, Qi J, Milliren CE, Ozonoff A, Liu S, Levy O, Baden LR, Melamed E, McComsey GA, Cairns CB, Schaenman J, Shaw AC, Hafler DA, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Geng LN, Sesma AF, Simon V, Krammer F, Bime C, Calfee CS, Bosinger SE, Eckalbar W, Steen H, Maecker HT, Augustine AD, Diray-Arce J, Haddad EK, Sekaly RP, Kraft M, Woodruff PG, Erle DJ, Ehrlich LI, Montgomery RR, Becker PM, Fourati S, Holland SM, Rosen LB, Lee S, Rousseau JF 2025 Nov Journal of Allergy and Clinical Immunology: Global 4

Accuracy of Large Language Models to Identify Stroke Subtypes Within Unstructured Electronic Health Record Data

Owens D, Nguyen DQ, Dohopolski M, Rousseau JF, Peterson ED, Navar AM 2025 Oct Stroke 56 2966-2975

The structure of posttraumatic stress symptoms in youth with and without obsessive-compulsive disorder: New insights using factor and network analysis

Pinciotti CM, Cervin M, Drummond KN, Shahidullah JD, Rousseau JF, Dodd CG, Ramirez M, Hettema JM, Richmond R, Taylor LK, Monnat L, Proch L, Teng F, Goodman WK, Storch EA, Guzick AG, Newport DJ, Wagner KD, Nemeroff CB 2025 Sep Journal of Mood and Anxiety Disorders 11

Development and validation of natural language processing algorithms in the national ENACT network

Wang Y, Hilsman J, Li C, Morris M, Heider PM, Fu S, Kwak MJ, Wen A, Applegate JR, Wang L, Bernstam E, Liu H, Chang J, Harris DR, Corbeau A, Henderson D, Osborne J, Kennedy RE, Garduno-Rapp NE, Rousseau JF, Yan C, Chen Y, Patel MB, Murphy TJ, Malin BA, Park CM, Fan JW, Sohn S, Pagali S, Peng Y, Pathak A, Wu Y, Xia Z, Loguercio S, Reis SE, Visweswaran S 2025 Aug Journal of Clinical and Translational Science 9

Clinical characteristics and longitudinal associations with obsessive-compulsive disorder in youth exposed to trauma

Pinciotti CM, Rathouz PJ, Guzick AG, Shahidullah JD, Bivins EJ, Riddle DB, Onyeka O“, Storch EA, Goodman WK, Franco K, Rousseau JF, Newport DJ, Wagner KD, Nemeroff CB 2025 Jun Journal of Mood and Anxiety Disorders 10

Longitudinal Effects of Negative Ethnic-Racial Identity Affect on Internalizing Symptoms in Youth of Latiné Background Exposed to Interpersonal Trauma

Stewart SM, Aksan N, Bancroft A, Shahidullah JD, Krantz SM, Guerra M, Sandoval J, Garza C, Viana AG, Morgan M, DeVargas C, Rousseau JF, Newport DJ, Wagner KD, Nemeroff CB 2025 Jun Journal of Clinical Psychiatry 86

Short-Term Safety and Effectiveness for Tenecteplase and Alteplase in Acute Ischemic Stroke

Rousseau JF, Weber JM, Alhanti B, Saver JL, Messé SR, Schwamm LH, Fonarow GC, Sheth KN, Smith EE, Mullen MT, Silva GS, Grory BM, Xian Y, Warach SJ 2025 Mar JAMA Network Open 8 e250548

From GPT to DeepSeek: Significant gaps remain in realizing AI in healthcare

Peng Y, Malin BA, Rousseau JF, Wang Y, Xu Z, Xu X, Weng C, Bian J 2025 Mar Journal of Biomedical Informatics 163

Creating a collaborative culture of learning within a network of community mental health early psychosis programs in Texas

Lopez MA, Reznik SJ, Klodnick VV, Cohen D, Myers N, Rousseau JF, Aksan N, de Oliveira E, Strakowski SM 2025 Feb Schizophrenia Research 276 1-7

Latent Classes of Adolescent Trauma Exposure, Posttraumatic Stress Disorder Symptoms, and Substance Use Predict Clinical Diagnoses at 12-Month Follow-Up

Leri J, Cisler JM, Clark SL, Dodd CG, Siddiqui S, Taylor L, Ayala A, Stewart S, Richmond R, Shahidullah JD, Rousseau JF, Hettema JM, Newport DJ, Wagner KD, Nemeroff CB 2025 Jan Chronic Stress 9

Ambient technology in epilepsy clinical practice

Kakwan H, Rousseau JF, Moura LM, Sheikh IS 2025 Epilepsia Open

Deep Learning-Based Detection of Cognitive Impairment from Passive Smartphone Sensing with Routine-Aware Augmentation and Demographic Personalization

Shen Y, Park JH, Huang M, Benge JF, Rousseau JF, Lester-Smith RA, Thomaz E 2025

Hidden flaws behind expert-level accuracy of multimodal GPT-4 vision in medicine

Jin Q, Chen F, Zhou Y, Xu Z, Cheung JM, Chen R, Summers RM, Rousseau JF, Ni P, Landsman MJ, Baxter SL, Al’Aref SJ, Li Y, Chen A, Brejt JA, Chiang MF, Peng Y, Lu Z 2024 Dec npj Digital Medicine 7

IgM N-glycosylation correlates with COVID-19 severity and rate of complement deposition

Author Collaboration ID, Author Collaboration IS, Author Collaboration IC, Author Collaboration IC, Author Collaboration IN, Author Collaboration IS, Author Collaboration C&, Haslund-Gourley BS, Woloszczuk K, Hou J, Connors J, Cusimano G, Bell M, Taramangalam B, Fourati S, Mege N, Bernui M, Altman MC, Krammer F, van Bakel H, Maecker HT, Rouphael N, Diray-Arce J, Wigdah B, Kutzler MA, Cairns CB, Haddad EK, Comunale MA, Ozonoff A, Ehrlich LI, Melamed E, Sesma AF, Simon V, Pulendran B, Nadeau KC, Davis MM, McCoey GA, Sekaly R, Baden LR, Levy O, Schaenman J, Reed EF, Shaw AC, Hafler DA, Montgomery RR, Kleinstein SH, Becker PM, Augustine AD, Calfee CS, Erle DJ, Debakey ME, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Rousseau JF 2024 Dec Nature communications 15

Beyond bias: Aggregate approaches to conflicts of interest research and policy in biomedical research

Graham SS, Harrison KR, Edward JC, Majdik ZP, Barbour JB, Rousseau JF 2024 Sep World Medical and Health Policy 16 489-505

Patient Characteristics, Management, and Outcomes in a Novel Cohort of Primary Hyperparathyroidism

Sant VR, Elnakieb Y, Lehmann CU, Rousseau JF, Maalouf NM 2024 Aug Journal of the Endocrine Society 8

Comparing diagnostic criteria for posttraumatic stress disorder in a diverse sample of trauma-exposed youth

Dodd CG, Kirk CL, Rathouz PJ, Custer J, Garrett AS, Taylor L, Rousseau JF, Claasen C, Morgan MM, Newport DJ, Wagner KD, Nemeroff CB 2024 Aug Journal of Traumatic Stress 37 606-616

The role of resilience in the development of depression, anxiety, and post-traumatic stress disorder after trauma in children and adolescents

Srivastava AV, Brown R, Newport DJ, Rousseau JF, Wagner KD, Guzick A, Devargas C, Claassen C, Ugalde IT, Garrett A, Gushanas K, Liberzon I, Cisler JM, Nemeroff CB 2024 Apr Psychiatry research 334

The risk and burden of thromboembolic and hemorrhagic events in patients with malignant gliomas receiving bevacizumab

Dasgupta P, Ou A, Lin H, Gregory T, Alfaro-Munoz KD, Yuan Y, Afshar-Khargan V, Kamiya-Matsuoka C, Rousseau JF, Majd NK 2024 Mar Journal of Neuro-Oncology 167 181-188

Comparative effectiveness of dexamethasone in treatment of hospitalized COVID-19 patients in the United States during the first year of the pandemic: Findings from the National COVID Cohort Collaborative (N3C) data repository

Zhou R, Johnson KE, Rousseau JF, Rathouz PJ, Wilcox AB, Lee AM, Graves A, Anzalone A, Manna A, Saha A, Olex A, Zhou A, Williams AE, Southerland A, Girvin AT, Walden A, Sharathkumar AA, Amor B, Bates B, Hendricks B, Patel B, Alexander C, Bramante C, Ward-Caviness C, Madlock-Brown C, Suver C, Chute C, Dillon C, Wu C, Schmitt C, Takemoto C, Housman D, Gabriel D, Eichmann DA, Mazzotti D, Brown D, Boudreau E, Hill E, Zampino E, Carlson Marti E, Pfaff ER, French E, Koraishy FM, Mariona F, Prior F, Sokos G, Martin G, Lehmann H, Spratt H, Mehta H, Liu H, Sidky H, Hayanga JW, Pincavitch J, Clark J, Harper JR, Islam J, Ge J, Gagnier J, Saltz JH, Saltz J, Loomba J, Buse J, Mathew J, Rutter JL, McMurry JA, Guinney J, Starren J, Crowley K, Bradwell KR, Walters KM, Wilkins K, Gersing KR, Cato KD, Murray K, Kostka K, Northington L, Pyles LA, Misquitta L, Cottrell L, Portilla L, Deacy M, Bissell MM, Clark M, Emmett M, Saltz MM, Palchuk MB, Haendel MA, Adams M, Temple-O'Connor M, Kurilla MG, Morris M, Qureshi N, Safdar N, Garbarini N, Sharafeldin N, Sadan O, Francis PA, Burgoon PW, Robinson P, Payne PR, Fuentes R, Jawa R, Erwin-Cohen R, Patel R, Moffitt RA, Zhu RL, Kamaleswaran R, Hurley R, Miller RT, Pyarajan S, Michael SG, Bozzette S, Mallipattu S, Vedula S, Chapman S, O'Neil ST, Setoguchi S, Hong SS, Johnson S, Bennett TD, Callahan T, Topaloglu U, Sheikh U, Gordon V, Subbian V, Kibbe WA, Hernandez W, Beasley W, Cooper W, Hillegass W, Tanner Zhang X 2024 Mar PloS one 19

Clinical and molecular determinants of bleeding-related adverse outcomes in high-grade glioma

Dasgupta P, Rousseau JF 2024 Feb Journal of Neuro-Oncology 166 569-574

Evaluating traumatic event scoring schemas for their predictive value to concurrent diagnostic profiles: Texas Childhood Trauma Research Network

Aksan N, Guzick AG, Taylor L, Richmond R, Liberzon I, Cross J, Garza C, Rousseau J, Shahidullah JD, Clark SL, Rathouz PJ, Dodd CG, Cisler J, Newport DJ, Wagner KD, Nemeroff CB 2024 Jan Journal of affective disorders 345 94-102

Features of acute COVID-19 associated with post-acute sequelae of SARS-CoV-2 phenotypes: results from the IMPACC study

Author Collaboration IN, Author Collaboration IS, Author Collaboration C&, Author Collaboration ID, Author Collaboration IS, Author Collaboration IC, Author Collaboration IC, Ozonoff A, Jayavelu ND, Liu S, Melamed E, Milliren CE, Qi J, Geng LN, McComsey GA, Cairns CB, Baden LR, Schaenman J, Shaw AC, Samaha H, Seyfert-Margolis V, Krammer F, Rosen LB, Steen H, Syphurs C, Dandekar R, Shannon CP, Sekaly RP, Ehrlich LI, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Sesma AF, Simon V, van Bakel H, Kim-Schulze S, Hafler DA, Levy O, Kraft M, Bime C, Haddad EK, Calfee CS, Erle DJ, Langelier CR, Eckalbar W, Bosinger SE, Peters B, Kleinstein SH, Rousseau JF 2024 Jan Nature communications 15

Sample Size Considerations for Fine-Tuning Large Language Models for Named Entity Recognition Tasks: Methodological Study

Majdik ZP, Graham SS, Shiva Edward JC, Rodriguez SN, Karnes MS, Jensen JT, Barbour JB, Rousseau JF 2024 JMIR AI 3

Evaluating large language models on medical evidence summarization

Tang L, Sun Z, Idnay B, Nestor JG, Soroush A, Elias PA, Xu Z, Ding Y, Durrett G, Rousseau JF, Weng C, Peng Y 2023 Dec npj Digital Medicine 6

Characterizing patterns of substance use in trauma exposed youth

Clark SL, Dodd CG, Taylor L, Stewart S, Yang N, Shahidullah JD, Guzick AG, Richmond R, Aksan N, Rathouz PJ, Rousseau JF, Newport DJ, Wagner KD, Nemeroff CB 2023 Nov Journal of Psychiatric Research 167 1-9

Relationship of Heterologous Virus Responses and Outcomes in Hospitalized COVID-19 Patients

Author Collaboration IN, Rosenberg-Hasson Y, Holmes TH, Diray-Arce J, Chen J, Kellogg R, Snyder M, Becker PM, Ozonoff A, Rouphael N, Reed EF, Maecker HT, Al Ozonoff O, Diray-Arce J, Milliren CE, McEnaney K, Barton B, Lentucci C, Saluvan M, Chang AC, Hoch A, Albert M, Shaheen T, Kho AT, Liu S, Thomas S, Chen J, Murphy MD, Cooney M, Syphurs C, Hayati AN, Bryant R, Abraham J, Schaenman J, Reed EF, Salehi-Rad R, Elashoff D, Brook J, Ramires-Sanchez E, Llamas M, Rivera A, Perdomo C, Ward DC, Magyar CE, Fulcher J, Pickering HC, Sen S, Jayavelu ND, Altman MC, Presnell S, Rousseau J 2023 Oct Journal of Immunology 211 1224-1231

AI-generated text may have a role in evidence-based medicine

Peng Y, Rousseau JF, Shortliffe EH, Weng C 2023 Jul Nature medicine 29 1593-1594

Multi-omic longitudinal study reveals immune correlates of clinical course among hospitalized COVID-19 patients

Author Collaboration IN, Diray-Arce J, Fourati S, Doni Jayavelu N, Patel R, Maguire C, Chang AC, Dandekar R, Qi J, Lee BH, van Zalm P, Schroeder A, Chen E, Konstorum A, Brito A, Gygi JP, Kho A, Chen J, Pawar S, Gonzalez-Reiche AS, Hoch A, Milliren CE, Overton JA, Westendorf K, Abraham J, Adkisson M, Albert M, Altamirano Torres L, Alvarenga B, Anderson ML, Anderson EJ, Arnett A, Asashima H, Atkinson MA, Baden LR, Barton B, Beach K, Beagle E, Becker PM, Bell MR, Bernui M, Bime C, Boddapati Kumar A, Booth LJ, Borresen B, Brakenridge SC, Bristow L, Bryant R, Calfee CS, Carreño Manuel J, Rousseau JF 2023 Jun Cell Reports Medicine 4

Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses

Tang L, Peng Y, Wang Y, Ding Y, Durrett G, Rousseau JF 2023 12532-12555

Designing an interprofessional dementia specialty clinic: Conceptualization and evaluation of a patient-centered model

Aguirre A, Hilsabeck RC, O’Mahar K, Carberry KE, Ayers G, Bertelson J, Rousseau JF, Paydarfar D 2023 Journal of Interprofessional Care 37 254-261

Attend Who is Weak: Pruning-assisted Medical Image Localization under Sophisticated and Implicit Imbalances

Jaiswal A, Chen T, Rousseau JF, Peng Y, Ding Y, Wang Z 2023 4976-4985

Understanding Factual Errors in Summarization: Errors, Summarizers, Datasets, Error Detectors

Tang L, Goyal T, Fabbri AR, Laban P, Xu J, Yavuz S, Kryściński W, Rousseau JF, Durrett G 2023 11626-11644

A Content Analysis of Self-Reported Financial Relationships in Biomedical Research

Graham SS, Sharma N, Karnes MS, Majdik ZP, Barbour JB, Rousseau JF 2023 AJOB Empirical Bioethics 14 91-98

Methods for development and application of data standards in an ontology-driven information model for measuring, managing, and computing social determinants of health for individuals, households, and communities evaluated through an example of asthma

Rousseau JF, Oliveira E, Tierney WM, Khurshid A 2022 Dec Journal of Biomedical Informatics 136

Trends in Oral Anticoagulant Use Among 436 864 Patients With Atrial Fibrillation in Community Practice, 2011 to 2020

Navar AM, Kolkailah AA, Overton R, Shah NP, Rousseau JF, Flaker GC, Pignone MP, Peterson ED 2022 Nov Journal of the American Heart Association 11

Analytics to monitor local impact of the Protecting Access to Medicare Act's imaging clinical decision support requirements

Valtchinov VI, Murphy SN, Lacson R, Ikonomov N, Zhai BK, Andriole K, Rousseau J, Hanson D, Kohane IS, Khorasani R 2022 Nov Journal of the American Medical Informatics Association 29 1870-1878

Real-world opioid use among patients with migraine enrolled in US commercial insurance and risk factors associated with migraine progression

Shao Q, Rascati KL, Lawson KA, Barner JC, Sonawane KB, Rousseau JF 2022 Nov Journal of Managed Care and Specialty Pharmacy 28 1272-1281

Evidence for stratified conflicts of interest policies in research contexts: a methodological review

Graham SS, Karnes MS, Jensen JT, Sharma N, Barbour JB, Majdik ZP, Rousseau JF 2022 Sep BMJ Open 12

Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: Results from the IMPACC study

Author Collaboration tI, Ozonoff A, Schaenman J, Jayavelu ND, Milliren CE, Calfee CS, Cairns CB, Kraft M, Baden LR, Shaw AC, Krammer F, van Bakel H, Esserman DA, Liu S, Sesma AF, Simon V, Hafler DA, Montgomery RR, Kleinstein SH, Levy O, Bime C, Haddad EK, Erle DJ, Pulendran B, Nadeau KC, Davis MM, Hough CL, Messer WB, Higuita NI, Metcalf JP, Atkinson MA, Brakenridge SC, Corry D, Kheradmand F, Ehrlich LI, Melamed E, McComsey GA, Sekaly R, Diray-Arce J, Peters B, Augustine AD, Reed EF, Altman MC, Becker PM, Rouphael N, Bime C, McEnaney K, Barton B, Lentucci C, Saluvan M, Rousseau JF 2022 Sep EBioMedicine 83

Trustworthy assertion classification through prompting

Wang S, Tang L, Majety A, Rousseau JF, Shih G, Ding Y, Peng Y 2022 Aug Journal of Biomedical Informatics 132

Associations Between Aggregate NLP-Extracted Conflicts of Interest and Adverse Events by Drug Product

Graham SS, Majdik ZP, Barbour JB, Rousseau JF 2022 Jun 405-409

Healthcare utilization and costs among patients with chronic migraine, episodic migraine, and tension-type headache enrolled in commercial insurance plans

Shao Q, Rascati KL, Barner JC, Lawson KA, Sonawane KB, Rousseau JF 2022 Feb Headache 62 141-158

Old can be Gold: Better Gradient Flow can Make Vanilla-GCNs Great Again

Jaiswal A, Wang P, Chen T, Rousseau JF, Ding Y, Wang Z 2022

EchoGen: A New Benchmark Study on Generating Conclusions from Echocardiogram Notes

Tang L, Kooragayalu S, Wang Y, Ding Y, Durrett G, Rousseau JF, Peng Y 2022 359-368

RoS-KD: A Robust Stochastic Knowledge Distillation Approach for Noisy Medical Imaging

Jaiswal A, Ashutosh K, Rousseau JF, Peng Y, Wang Z, Ding Y 2022 981-986

A dashboard for exploring clinical trials sponsorship and potential virtual monopolies

Graham SS, Majdik ZP, Barbour JB, Rousseau JF 2021 Oct JAMIA Open 4

Letter to the editor in response to "risk prediction of delirium in hospitalized patients using machine learning: An implementation and prospective evaluation study"

Rousseau JF, Tierney WM 2021 Mar Journal of the American Medical Informatics Association 28 664-665

RadBERT-CL: Factually-Aware Contrastive Learning For Radiology Report Classification

Jaiswal A, Tang L, Ghosh M, Rousseau JF, Peng Y, Ding Y 2021 Proceedings of Machine Learning Research 158 196-206

SCALP - Supervised Contrastive Learning for Cardiopulmonary Disease Classification and Localization in Chest X-rays using Patient Metadata

Jaiswal A, Li T, Zander C, Han Y, Rousseau JF, Peng Y, Ding Y 2021 1132-1137

Building a PubMed knowledge graph

Xu J, Kim S, Song M, Jeong M, Kim D, Kang J, Rousseau JF, Li X, Xu W, Torvik VI, Bu Y, Chen C, Ebeid IA, Li D, Ding Y 2020 Dec Scientific Data 7

Can emergency department provider notes help to achieve more dynamic clinical decision support?

Rousseau JF, Ip IK, Raja AS, Schuur JD, Khorasani R 2020 Dec JACEP Open 1 1269-1277

Understanding drug repurposing from the perspective of biomedical entities and their evolution: Bibliographic research using aspirin

Li X, Rousseau JF, Ding Y, Song M, Lu W 2020 Jun JMIR Medical Informatics 8

Heterogeneous Graph Embeddings of Electronic Health Records Improve Critical Care Disease Predictions

Wanyan T, Kang M, Badgeley MA, Johnson KW, De Freitas JK, Chaudhry FF, Vaid A, Zhao S, Miotto R, Nadkarni GN, Wang F, Rousseau J, Azad A, Ding Y, Glicksberg BS 2020 14-25

Can Automated Retrieval of Data from Emergency Department Physician Notes Enhance the Imaging Order Entry Process?

Rousseau JF, Ip IK, Raja AS, Valtchinov VI, Cochon L, Schuur JD, Khorasani R 2019 Applied Clinical Informatics 10 189-198

Measuring and Managing Population Health

Tierney WM, Rousseau JF, Khurshid A 2018 Feb Texas Medicine 114 42-51

In Reply to “Erroneous Methodology in ‘Craniotomy Versus Craniectomy for Acute Traumatic Subdural Hematoma in the United States: A National Retrospective Cohort Analysis’”

Rush B, Rousseau J, Sekhon M, Griesdale DE 2016 Jul World Neurosurgery 91 652

Pulling it all together: Envisioning a data-driven, ideal care system

Stone D, Rousseau J, Lai Y 2016 Jan 27-42

Craniotomy Versus Craniectomy for Acute Traumatic Subdural Hematoma in the United States: A National Retrospective Cohort Analysis

Rush B, Rousseau J, Sekhon MS, Griesdale DE 2016 World Neurosurgery 88 25-31

Prosodic stress: Acoustic, aphasic, aprosodic and neuroanatomic interactions

Ross ED, Shayya L, Rousseau JF 2013 Sep Journal of Neurolinguistics 26 526-551