Publications for Radomir Chabiniok, M.D., Ph. D

Mathematical modeling of myocardial perfusion using lattice Boltzmann method

Kovář J, Fučík R, Hussain T, Fares M, Chabiniok R 2026 Feb Computers and Mathematics with Applications 203 230-253

Cardiac digital twins: Modelling the arrhythmic substrate of chemotherapy

Chabiniok R, Zaha VG 2026 Journal of Physiology

Objective assessment of cardiac function using patient-specific biophysical modeling based on cardiovascular MRI combined with catheterization

Gusseva M, Castellanos DA, Reddy SV, Hussain T, Chapelle D, Chabiniok R 2025 Nov American Journal of Physiology - Heart and Circulatory Physiology 329 H1180-H1191

Biomechanical modeling combined with pressure-volume loop analysis to aid surgical planning in patients with complex congenital heart disease

Gusseva M, Thatte N, Castellanos DA, Hammer PE, Ghelani SJ, Callahan R, Hussain T, Chabiniok R 2025 Apr Medical Image Analysis 101

Preface

Chabiniok R, Zou Q, Hussain T, Nguyen HH, Zaha VG, Gusseva M 2025 Lecture Notes in Computer Science 15673 LNCS v-viii

Preface

Chabiniok R, Zou Q, Hussain MT, Nguyen HH, Zaha VG, Gusseva M 2025 Lecture Notes in Computer Science 15672 LNCS v-viii

Geometry Optimization of Idealized Total Cavopulmonary Connection Using a CFD-Based Framework

Bureš J, Fučík R, Chabiniok R 2025 397-406

A lattice Boltzmann approach to mathematical modeling of myocardial perfusion

Fučík R, Kovář J, Škardová K, Polívka O, Chabiniok R 2024 Jul International Journal for Numerical Methods in Biomedical Engineering 40

Patient-specific closed-loop model of the fontan circulation: Calibration and validation

Aramburu J, Ruijsink B, Chabiniok R, Pushparajah K, Alastruey J 2024 May Heliyon 10

Clinical Applications of Pressure-Volume Assessment in Congenital Heart Disease

Hiremath G, Batlivala S, Callahan R, Thatte N, Rockefeller T, Nawaytou H, Reddy SV, Hussain T, Chabiniok R, Butts R, Vettukattil J, Aregullin EO, Aldweib N, Burkhoff D, Brener MI 2023 May Journal of the Society for Cardiovascular Angiography and Interventions 2

Non-Newtonian turbulent flow through aortic phantom: Experimental and computational study using magnetic resonance imaging and lattice Boltzmann method

Eichler P, Galabov R, Fučík R, Škardová K, Oberhuber T, Pauš P, Tintěra J, Chabiniok R 2023 Apr Computers and Mathematics with Applications 136 80-94

Time-Synchronization of Interventional Cardiovascular Magnetic Resonance Data Using a Biomechanical Model for Pressure-Volume Loop Analysis

Gusseva M, Castellanos DA, Greer JS, Hussein MA, Hasbani K, Greil G, Veeram Reddy SR, Hussain T, Chapelle D, Chabiniok R 2023 Jan Journal of Magnetic Resonance Imaging 57 320-323

Effect of Spatial and Temporal Resolution on the Accuracy of Motion Tracking Using 2D and 3D Cine Cardiac Magnetic Resonance Imaging Data

Škardová K, Hussain T, Genet M, Chabiniok R 2023 235-244

Využití mřížkové Boltzmannovy metody k modelování průtoku v bifurkaci aorty: porovnání s 4D Flow MRI

Galabov R, Kovář J, Eichler P, Škardová K, Chabiniok R, Oberhuber T, Fučík R, Pauš P, Wodecki A, Novotný J, Tintěra J 2023 Ceska Radiologie 77 150-155

Biomechanical Model to Aid Surgical Planning in Complex Congenital Heart Diseases

Gusseva M, Thatte N, Castellanos DA, Hammer PE, Ghelani SJ, Callahan R, Hussain T, Chabiniok R 2023 616-625

Dimensional reduction of a poromechanical cardiac model for myocardial perfusion studies

Chabiniok R, Burtschell B, Chapelle D, Moireau P 2022 Dec Applications in Engineering Science 12

In Silico Modelling of Aortic Strain and Strain Rate in Aortic Coarctation Treated with Stent Angioplasty with Comparison to Clinical Cohorts

Gaddum N, Dillon-Murphy D, Arm R, Rafiq I, Chabiniok R, Morgan G, Schaeffter T, Hussain T 2022 Dec Applications in Engineering Science 12

Three-dimensional flows of incompressible Navier–Stokes fluids in tubes containing a sinus, with varying slip conditions at the wall

Chabiniok R, Hron J, Jarolímová A, Málek J, Rajagopal KR, Rajagopal K, Švihlová H, Tůma K 2022 Oct International Journal of Engineering Science 180

Altered Aortic Hemodynamics and Relative Pressure in Patients with Dilated Cardiomyopathy

Marlevi D, Mariscal-Harana J, Burris NS, Sotelo J, Ruijsink B, Hadjicharalambous M, Asner L, Sammut E, Chabiniok R, Uribe S, Winter R, Lamata P, Alastruey J, Nordsletten D 2022 Aug Journal of cardiovascular translational research 15 692-707

Correction to: Left Ventricular Torsion Obtained Using Equilibrated Warping in Patients with Repaired Tetralogy of Fallot (Pediatric Cardiology, (2021), 42, 6, (1275-1283), 10.1007/s00246-021-02608-y)

Castellanos DA, Škardová K, Bhattaru A, Berberoglu E, Greil G, Tandon A, Dillenbeck J, Burkhardt B, Hussain T, Genet M, Chabiniok R 2022 Jan Pediatric Cardiology 43 248

Zkušenosti s použitím a zpracováním dat z měření průtoků magnetickou rezonancí sekvencí 4D Flow

Galabov R, Škardová K, Chabiniok R, Oberhuber T, Fučík R, Eichler P, Kovář J, Pauš P, Wodecki A, Tintěra J 2022 Ceska Radiologie 76 249-255

Right-left ventricular shape variations in tetralogy of Fallot: associations with pulmonary regurgitation

Mauger CA, Govil S, Chabiniok R, Gilbert K, Hegde S, Hussain T, McCulloch AD, Occleshaw CJ, Omens J, Perry JC, Pushparajah K, Suinesiaputra A, Zhong L, Young AA 2021 Dec Journal of Cardiovascular Magnetic Resonance 23

Prediction of Ventricular Mechanics After Pulmonary Valve Replacement in Tetralogy of Fallot by Biomechanical Modeling: A Step Towards Precision Healthcare

Gusseva M, Hussain T, Hancock Friesen C, Greil G, Chapelle D, Chabiniok R 2021 Dec Annals of biomedical engineering 49 3339-3348

Biomechanical Modeling to Inform Pulmonary Valve Replacement in Tetralogy of Fallot Patients After Complete Repair

Gusseva M, Hussain T, Friesen CH, Moireau P, Tandon A, Patte C, Genet M, Hasbani K, Greil G, Chapelle D, Chabiniok R 2021 Nov Canadian Journal of Cardiology 37 1798-1807

Left Ventricular Torsion Obtained Using Equilibrated Warping in Patients with Repaired Tetralogy of Fallot

Castellanos DA, Škardová K, Bhattaru A, Berberoglu E, Greil G, Tandon A, Dillenbeck J, Burkhardt B, Hussain T, Genet M, Chabiniok R 2021 Aug Pediatric Cardiology 42 1275-1283

A benchmark problem to evaluate implementational issues for three-dimensional flows of incompressible fluids subject to slip boundary conditions

Chabiniok R, Hron J, Jarolímová A, Málek J, Rajagopal KR, Rajagopal K, Švihlová H, Tůma K 2021 Jun Applications in Engineering Science 6

HARP-I: A Harmonic Phase Interpolation Method for the Estimation of Motion from Tagged MR Images

Mella H, Mura J, Wang H, Taylor MD, Chabiniok R, Tintera J, Sotelo J, Uribe S 2021 Apr IEEE Transactions on Medical Imaging 40 1240-1252

Signed-distance function based non-rigid registration of image series with varying image intensity

Škardová K, Oberhuber T, Tintěra J, Chabiniok R 2021 Mar Discrete and Continuous Dynamical Systems - Series S 14 1145-1160

Model-Assisted Time-Synchronization of Cardiac MR Image and Catheter Pressure Data

Gusseva M, Greer JS, Castellanos DA, Hussein MA, Greil G, Veeram Reddy SR, Hussain T, Chapelle D, Chabiniok R 2021 362-372

Cardiac Modeling for Multisystem Inflammatory Syndrome in Children (MIS-C, PIMS-TS)

Waugh R, Hussein MA, Weller J, Sharma K, Greil G, Kahn J, Hussain T, Chabiniok R 2021 435-446

Translational Cardiovascular Modeling: Tetralogy of Fallot and Modeling of Diseases

Chabiniok R, Škardová K, Galabov R, Eichler P, Gusseva M, Janoušek J, Fučík R, Tintěra J, Oberhuber T, Hussain T 2021 241-276

Investigation of phase-contrast magnetic resonance imaging underestimation of turbulent flow through the aortic valve phantom: experimental and computational study using lattice Boltzmann method

Fučík R, Galabov R, Pauš P, Eichler P, Klinkovský J, Straka R, Tintěra J, Chabiniok R 2020 Oct Magnetic Resonance Materials in Physics, Biology and Medicine 33 649-662

Monitoring of cardiovascular physiology augmented by a patient-specific biomechanical model during general anesthesia. A proof of concept study

Le Gall A, Vallée F, Pushparajah K, Hussain T, Mebazaa A, Chapelle D, Gayat É, Chabiniok R 2020 May PloS one 15

Dobutamine stress testing in patients with Fontan circulation augmented by biomechanical modeling

Ruijsink B, Zugaj K, Wong J, Pushparajah K, Hussain T, Moireau P, Razavi R, Chapelle D, Chabiniok R 2020 Feb PloS one 15

The importance of the pericardium for cardiac biomechanics: from physiology to computational modeling

Pfaller MR, Hörmann JM, Weigl M, Nagler A, Chabiniok R, Bertoglio C, Wall WA 2019 Apr Biomechanics and Modeling in Mechanobiology 18 503-529

Minimally-Invasive Estimation of Patient-Specific End-Systolic Elastance Using a Biomechanical Heart Model

Le Gall A, Vallée F, Chapelle D, Chabiniok R 2019 266-275

Model-Based Indices of Early-Stage Cardiovascular Failure and Its Therapeutic Management in Fontan Patients

Ruijsink B, Zugaj K, Pushparajah K, Chabiniok R 2019 379-387

Cardiac Displacement Tracking with Data Assimilation Combining a Biomechanical Model and an Automatic Contour Detection

Chabiniok R, Bureau G, Groth A, Tintera J, Weese J, Chapelle D, Moireau P 2019 405-414

Mechanical and Imaging Models-Based Image Registration

Škardová K, Rambausek M, Chabiniok R, Genet M 2019 77-85

An adaptive hybridizable discontinuous Galerkin approach for cardiac electrophysiology

Hoermann JM, Bertoglio C, Kronbichler M, Pfaller MR, Chabiniok R, Wall WA 2018 May International Journal for Numerical Methods in Biomedical Engineering 34

Exploring kinetic energy as a new marker of cardiac function in the single ventricle circulation

Wong J, Chabiniok R, Tibby SM, Pushparajah K, Sammut E, Celermajer D, Giese D, Hussain T, Greil GF, Schaeffter T, Razavi R 2018 Journal of Applied Physiology 125 889-900

Non-invasive Model-Based Assessment of Passive Left-Ventricular Myocardial Stiffness in Healthy Subjects and in Patients with Non-ischemic Dilated Cardiomyopathy

Hadjicharalambous M, Asner L, Chabiniok R, Sammut E, Wong J, Peressutti D, Kerfoot E, King A, Lee J, Razavi R, Smith N, Carr-White G, Nordsletten D 2017 Mar Annals of biomedical engineering 45 605-618

Patient-specific modeling for left ventricular mechanics using data-driven boundary energies

Asner L, Hadjicharalambous M, Chabiniok R, Peressutti D, Sammut E, Wong J, Carr-White G, Razavi R, King AP, Smith N, Lee J, Nordsletten D 2017 Feb Computer Methods in Applied Mechanics and Engineering 314 269-295

Assessment of atrioventricular valve regurgitation using biomechanical cardiac modeling

Chabiniok R, Moireau P, Kiesewetter C, Hussain T, Razavi R, Chapelle D 2017 401-411

Vyšetření srdce a velkých cév magnetickou rezonancí-Přehled metod a nové perspektivy

Chabiniok R, Súkupová L, Kautznerová D, Tintěra J 2017 Ceska Radiologie 71 279-290

Estimation of passive and active properties in the human heart using 3D tagged MRI

Asner L, Hadjicharalambous M, Chabiniok R, Peresutti D, Sammut E, Wong J, Carr-White G, Chowienczyk P, Lee J, King A, Smith N, Razavi R, Nordsletten D 2016 Oct Biomechanics and Modeling in Mechanobiology 15 1121-1139

Multiphysics and multiscale modelling, data–model fusion and integration of organ physiology in the clinic: Ventricular cardiac mechanics

Chabiniok R, Wang VY, Hadjicharalambous M, Asner L, Lee J, Sermesant M, Kuhl E, Young AA, Moireau P, Nash MP, Chapelle D, Nordsletten DA 2016 Apr Interface Focus 6

Age-related changes in intraventricular kinetic energy: A physiological or pathological adaptation?

Wong J, Chabiniok R, de Vecchi A, Dedieu N, Sammut E, Schaeffter T, Razavi R 2016 Mar American Journal of Physiology - Heart and Circulatory Physiology 310 H747-H755

Eidolon: Visualization and computational framework for multi-modal biomedical data analysis

Kerfoot E, Fovargue L, Rivolo S, Shi W, Rueckert D, Nordsletten D, Lee J, Chabiniok R, Razavi R 2016 425-437

Analysis of passive cardiac constitutive laws for parameter estimation using 3D tagged MRI

Hadjicharalambous M, Chabiniok R, Asner L, Sammut E, Wong J, Carr-White G, Lee J, Razavi R, Smith N, Nordsletten D 2015 Aug Biomechanics and Modeling in Mechanobiology 14 807-828

Steps towards quantification of the cardiological stress exam

Chabiniok R, Sammut E, Hadjicharalambous M, Asner L, Nordsletten D, Razav R, Smith N 2015 12-20

Manifold learning for cardiac modeling and estimation framework

Chabiniok R, Bhatia KK, King AP, Rueckert D, Smith N 2015 284-294

Multiscale modelling of cardiac perfusion

Lee J, Cookson A, Chabiniok R, Rivolo S, Hyde E, Sinclair M, Michler C, Sochi T, Smith N 2015 Modeling, Simulation and Applications 14 51-96

Patient-Specific biomechanical modeling of cardiac amyloidosis – A case study

Chapelle D, Felder A, Chabiniok R, Guellich A, Deux JF, Damy T 2015 295-303

A spatially-distributed computational model to quantify behaviour of contrast agents in MR perfusion imaging

Cookson AN, Lee J, Michler C, Chabiniok R, Hyde E, Nordsletten D, Smith NP 2014 Oct Medical Image Analysis 18 1200-1216

Dimensional reductions of a cardiac model for effective validation and calibration

Caruel M, Chabiniok R, Moireau P, Lecarpentier Y, Chapelle D 2014 Aug Biomechanics and Modeling in Mechanobiology 13 897-914

Multi-scale parameterisation of a myocardial perfusion model using whole-organ arterial networks

Hyde ER, Cookson AN, Lee J, Michler C, Goyal A, Sochi T, Chabiniok R, Sinclair M, Nordsletten DA, Spaan J, Van Den Wijngaard JP, Siebes M, Smith NP 2014 Apr Annals of biomedical engineering 42 797-811

Myocardial perfusion distribution and coronary arterial pressure and flow signals: Clinical relevance in relation to multiscale modeling, a review

Nolte F, Hyde ER, Rolandi C, Lee J, Van Horssen P, Asrress K, Van Den Wijngaard JP, Cookson AN, Van De Hoef T, Chabiniok R, Razavi R, Michler C, Hautvast GL, Piek JJ, Breeuwer M, Siebes M, Nagel E, Smith NP, Spaan JA 2013 Nov Medical and Biological Engineering and Computing 51 1271-1286

Parameterisation of multi-scale continuum perfusion models from discrete vascular networks

Hyde ER, Michler C, Lee J, Cookson AN, Chabiniok R, Nordsletten DA, Smith NP 2013 May Medical and Biological Engineering and Computing 51 557-570

A computationally efficient framework for the simulation of cardiac perfusion using a multi-compartment Darcy porous-media flow model

Michler C, Cookson AN, Chabiniok R, Hyde E, Lee J, Sinclair M, Sochi T, Goyal A, Vigueras G, Nordsletten DA, Smith NP 2013 Feb International Journal for Numerical Methods in Biomedical Engineering 29 217-232

Segmentation of mri data by means of nonlinear diffusion

Chabiniok R, Maca R, Benes M, Tintera J 2013 Kybernetika 49 301-318

Dimensional reduction of cardiac models for effective validation and calibration

Caruel M, Chabiniok R, Moireau P, Lecarpentier Y, Chapelle D 2013 259-267

Flow analysis in cardiac chambers combining phase contrast, 3D tagged and cine MRI

Chabiniok R, Wong J, Giese D, Nordsletten D, Shi W, Greil G, Rueckert D, Razavi R, Schaeffter T, Smith N 2013 360-369

Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model

Chabiniok R, Moireau P, Lesault PF, Rahmouni A, Deux JF, Chapelle D 2012 May Biomechanics and Modeling in Mechanobiology 11 609-630

A novel porous mechanical framework for modelling the interaction between coronary perfusion and myocardial mechanics

Cookson AN, Lee J, Michler C, Chabiniok R, Hyde E, Nordsletten DA, Sinclair M, Siebes M, Smith NP 2012 Mar Journal of Biomechanics 45 850-855

Patient-specific electromechanical models of the heart for the prediction of pacing acute effects in CRT: A preliminary clinical validation

Sermesant M, Chabiniok R, Chinchapatnam P, Mansi T, Billet F, Moireau P, Peyrat JM, Wong K, Relan J, Rhode K, Ginks M, Lambiase P, Delingette H, Sorine M, Rinaldi CA, Chapelle D, Razavi R, Ayache N 2012 Jan Medical Image Analysis 16 201-215

Trials on tissue contractility estimation from cardiac cine MRI using a biomechanical heart model

Chabiniok R, Moireau P, Lesault PF, Rahmouni A, Deux JF, Chapelle D 2011 304-312

The first international workshop on the role and impact of mathematics in medicine: A collective account

Artzrouni M, Begg CB, Chabiniok R, Clairambault J, Foss AJ, Hargrove J, Lee EK, Siggers JH, Tindall M 2011 American Journal of Translational Research 3 492-497

Constitutive parameter estimation methodology using tagged-MRI data

Imperiale A, Chabiniok R, Moireau P, Chapelle D 2011 409-417

Cardiac motion estimation using a ProActive deformable model: Evaluation and sensitivity analysis

Wong KC, Billet F, Mansi T, Chabiniok R, Sermesant M, Delingette H, Ayache N 2010 154-163

Personalised electromechanical model of the heart for the prediction of the acute effects of cardiac resynchronisation therapy

Sermesant M, Billet F, Chabiniok R, Mansi T, Chinchapatnam P, Moireau P, Peyrat JM, Rhode K, Ginks M, Lambiase P, Arridge S, Delingette H, Sorine M, Rinaldi CA, Chapelle D, Razavi R, Ayache N 2009 239-248

Funkční MR zobrazení mozkové aktivace při testu verbální fluence u pacientů s patologií levé hemisféry: Součást předoperačního plánování

Tintěra J, Klener J, Horáček J, Španiel F, Chabiniok R, Kršek P, Vymazal J 2004 Ceska Radiologie 58 8-14

Funkční MR zobrazení mozkové aktivace při testu verbální fluence u pacientů s patologií levé hemisféry: Součást předoperačního plánování

Tintěra J, Dezortová M, Španiel F, Horáček J, Klener J, Chabiniok R, Vymazal J, Kršek P 2003 Psychiatrie 7 21-26