Publications

Google Scholar

Rubrics to Prompts: Assessing Medical Student Post-Encounter Notes with AI

Andrew R. Jamieson and Michael J. Holcomb and Thomas O. Dalton and Krystle K. Campbell and Sol Vedovato and Ameer Hamza Shakur and Shinyoung Kang and David Hein and Jack Lawson and Gaudenz Danuser and Daniel J. Scott NEJM AI 2024 1 12

Automatic Physical Examination Segmentation within Objective Structured Clinical Examination Videos
Shinyoung Kang, Michael J. Holcomb, David Hein, Ameer H. Shakur, Thomas O. Dalton, Andrew R. Jamieson medRxiv 2025

Prompts to Table: Specification and Iterative Refinement for Clinical Information Extraction with Large Language Models
David Hein, Alana Christie, Michael Holcomb, Bingqing Xie, AJ Jain, Joseph Vento, Neil Rakheja, Ameer Hamza Shakur, Scott Christley, Lindsay G. Cowell, James Brugarolas, Andrew Jamieson, Payal Kapur, npj Digital Medicine (in press)

Zero-Shot Multimodal Question Answering for Assessment of Medical Student OSCE Physical Exam Videos

Michael J. Holcomb, Shinyoung Kang, Ameer Shakur, Sol Vedovato, David Hein, Thomas O. Dalton, Krystle K. Campbell, Daniel J. Scott, Gaudenz Danuser, Andrew R. Jamieson medRxiv 2024

Large Language Models for Medical OSCE Assessment: A Novel Approach to Transcript Analysis

Ameer Hamza Shakur, Michael J. Holcomb, David Hein, Shinyoung Kang, Thomas O. Dalton, Krystle K. Campbell, Daniel J. Scott, Andrew R. Jamieson arXiv 2024

Featured Publications

Iterative refinement and goal articulation to optimize large language models for clinical information extraction.

Hein D, Christie A, Holcomb M, Xie B, Jain AJ, Vento J, Rakheja N, Shakur AH, Christley S, Cowell LG, Brugarolas J, Jamieson AR, Kapur P, 2025 May NPJ Digit Med 1 8 301

Rubrics to Prompts: Assessing Medical Student Post-Encounter Notes with AI

Interpretable deep learning uncovers cellular properties in label-free live cell images that are predictive of highly metastatic melanoma.

Zaritsky A, Jamieson AR, Welf ES, Nevarez A, Cillay J, Eskiocak U, Cantarel BL, Danuser G, 2021 May Cell Syst

Universal consensus 3D segmentation of cells from 2D segmented stacks.

Zhou FY, Marin Z, Yapp C, Zou Q, Nanes BA, Daetwyler S, Jamieson AR, Islam MT, Jenkins E, Gihana GM, Lin J, Borges HM, Chang BJ, Weems A, Morrison SJ, Sorger PK, Fiolka R, Dean KM, Danuser G, 2025 Mar bioRxiv

Large Language Models for Medical OSCE Assessment: A Novel Approach to Transcript Analysis

Ameer Hamza Shakur, Michael J. Holcomb, David Hein, Shinyoung Kang, Thomas O. Dalton, Krystle K. Campbell, Daniel J. Scott, Andrew R. Jamieson 2024 arXiv

Zero-Shot Multimodal Question Answering for Assessment of Medical Student OSCE Physical Exam Videos

Michael J. Holcomb, Shinyoung Kang, Ameer Shakur, Sol Vedovato, David Hein, Thomas O. Dalton, Krystle K. Campbell, Daniel J. Scott, Gaudenz Danuser, Andrew R. Jamieson 2024 medRxiv

Heterozygous Mutation of Vegfr3 Reduces Renal Lymphatics Without Renal Dysfunction.

Liu H, Hiremath C, Patterson Q, Vora S, Shang Z, Jamieson A, Fiolka R, Dean K, Dellinger M, Marciano D, 2021 Sep J Am Soc Nephrol

Rethinking Autonomous Surgery: Focusing on Enhancement over Autonomy.

Battaglia E, Boehm J, Zheng Y, Jamieson AR, Gahan J, Majewicz Fey A, 2021 Jul Eur Urol Focus

A Silver Lining? Fewer non-SARS-CoV-2 Respiratory Viruses during the COVID-19 Pandemic.

Most ZM, Holcomb M, Jamieson AR, Perl TM, 2021 Apr J Infect Dis

What the Coronavirus Disease 2019 (COVID-19) Pandemic Has Reinforced: The Need for Accurate Data.

Arvisais-Anhalt S, Lehmann CU, Park JY, Araj E, Holcomb M, Jamieson AR, McDonald S, Medford RJ, Perl TM, Toomay SM, Hughes AE, McPheeters ML, Basit M, 2021 03 Clin Infect Dis 6 72 920-923

Robust and automated detection of subcellular morphological motifs in 3D microscopy images.

Driscoll MK, Welf ES, Jamieson AR, Dean KM, Isogai T, Fiolka R, Danuser G, 2019 10 Nat Methods 10 16 1037-1044

Pilot study demonstrating potential association between breast cancer image-based risk phenotypes and genomic biomarkers.

Li H, Giger ML, Sun C, Ponsukcharoen U, Huo D, Lan L, Olopade OI, Jamieson AR, Brown JB, Di Rienzo A 2014 Mar Med Phys 3 41 031917

Exploring nonlinear feature space dimension reduction and data representation in breast Cadx with Laplacian eigenmaps and t-SNE.

Jamieson AR, Giger ML, Drukker K, Li H, Yuan Y, Bhooshan N 2010 Jan Med Phys 1 37 339-51

Enhancement of breast CADx with unlabeled data.

Jamieson AR, Giger ML, Drukker K, Pesce LL 2010 Aug Med Phys 8 37 4155-72

Evaluation of computer-aided diagnosis on a large clinical full-field digital mammographic dataset.

Li H, Giger ML, Yuan Y, Chen W, Horsch K, Lan L, Jamieson AR, Sennett CA, Jansen SA 2008 Nov Acad Radiol 11 15 1437-45