2021
Murali, V. S., Çobanoğlu, D. A., Hsieh, M., Zinn, M., Malladi, V. S., Gesell, J., Williams, N. S., Welf, E. S., Raj, G.R., Çobanoğlu, M. C., "Cancer drug discovery as a low rank tensor completion problem," bioRxiv.
2020
Çobanoglu M. C., "Fast and interpretable scRNA-seq data analysis," bioRxiv.
VanHorn, K. C., Çobanoglu M. C., "Haisu: Hierarchical Supervised Nonlinear Dimensionality Reduction," bioRxiv.
Alexander J. C., Romito B. T., Çobanoglu M. C., "The present and future role of artificial intelligence and machine learning in anesthesiology," International Anesthesiology Clinics.
2019
Murali V. S., Chang B. J., Fiolka R., Danuser G., Çobanoğlu M. C., Welf E. S. "An image-based assay to quantify changes in proliferation and viability upon drug treatment in 3D microenvironments," BMC Cancer.
Amin V., Agaç D., Barnes S. D., Çobanoglu M. C., "Accurate differential analysis of transcription factor activity from gene expression," Bioinformatics.
Wang Y., Çobanoğlu M.C., Li J., Hidvegi T., Hale P., Ewing M., Chu A. S., Gong Z., Muzumdar R., Pak S. C., Silverman G. A., Bahar I., Perlmutter D. H. "An analog of glibenclamide selectively enhances autophagic degradation of misfolded a1-antitrypsin Z," PLoS One.
2017
Pei F., Li H., Henderson M. J., Titus S. A., Jadhav A., Simeonov A., Çobanoğlu M.C., Mousavi S. H., Shun T., McDermott L., Iyer P, Fioravanti M., Carlisle D., Friedlander R. M., Bahar I., Taylor D. L., Lezon T. R., Stern A. M., Schurdak M. E. "Connecting Neuronal Cell Protective Pathways and Drug Combinations in a Huntington's Disease Model through the Application of Quantitative Systems Pharmacology," Scientific Reports.
2016
Wise* A. and Çobanoğlu* M. C. "Predicting Targeted Cancer Therapeutics," bioRxiv.
2015
Çobanoğlu, M. C., Oltvai, Z. N., Taylor, D. L. and Bahar, I. "BalestraWeb: efficient online evaluation of drug-target interactions," Bioinformatics.
Cheng M. H., Block E., Hu F., Çobanoğlu M. C., Sorkin A., and Bahar I. "Insights into the Modulation of Dopamine Transporter Function by Amphetamine, Orphenadrine, and Cocaine Binding," Frontiers in Neurology.
2014
O'Reilly* L. P., Long* O. S., Çobanoğlu* M. C., Benson J. A., Luke C. J., Miedel M. T., Hale P., Perlmutter D. H., Bahar I., Silverman G. A. and Pak S. C. "A genome-wide RNAi screen identifies potential drug targets in a C. elegans model of α1-antitrypsin deficiency," Human Molecular Genetics.
2013
Çobanoğlu, M. C., Liu, C., Hu, F., Oltvai, Z. N. and Bahar, I. "Predicting drug-target interactions using probabilistic matrix factorization," Journal of Chemical Information Modeling.
Cayli, M., Çobanoğlu, M. C. and Balcisoy, S. "GlyphLink: An interactive visualization approach for semantic graphs," Journal of Visual Languages and Computing.
2012
Kim H., Bernard M. E., Farkas A., Goff J., Kalash R., Houghton F., Shields D., Franicola D., Dixon T., Zhang X., Epperly M., Wang H., Çobanoğlu M. C., Greenberger J. S., "Ionizing irradiation protection and mitigation of murine cells by carbamazepine is p53 and autophagy independent," In Vivo.
2011
Çobanoğlu, M. C., Saygin, Y. and Sezerman, U. "Classification of GPCRs using family specific motifs," IEEE/ACM Transactions in Computational Biology and Bioinformatics.
2010
Çobanoğlu, M. C., Sezerman, U. and Karabulut, N. P. "Determining the ligand-specific regions of peptide-binding G-Protein Coupled Receptors," in Health Informatics and Bioinformatics (HIBIT).
2009
Çobanoğlu, M. C., Kindiroglu, A. A. and Balcisoy, S. "Comparison of mobile device navigation information display alternatives from the cognitive load perspective," in International Conference on Engineering Psychology and Cognitive Ergonomics.