Murali, V. S., Çobanoğlu, D. A., Hsieh, M., Zinn, M., Malladi, V. S., Gesell, J., Williams, N. S., Welf, E. S., Raj, G.R., Çobanoğlu, M. C., "Cancer drug discovery as a low rank tensor completion problem," bioRxiv.


Çobanoglu M. C., "Fast and interpretable scRNA-seq data analysis," bioRxiv.

VanHorn, K. C., Çobanoglu M. C., "Haisu: Hierarchical Supervised Nonlinear Dimensionality Reduction," bioRxiv.

Alexander J. C., Romito B. T., Çobanoglu M. C., "The present and future role of artificial intelligence and machine learning in anesthesiology," International Anesthesiology Clinics. 


Murali V. S., Chang B. J., Fiolka R., Danuser G., Çobanoğlu M. C., Welf E. S. "An image-based assay to quantify changes in proliferation and viability upon drug treatment in 3D microenvironments," BMC Cancer.

Amin V., Agaç D., Barnes S. D., Çobanoglu M. C., "Accurate differential analysis of transcription factor activity from gene expression," Bioinformatics.

Wang Y., Çobanoğlu M.C., Li J., Hidvegi T., Hale P., Ewing M., Chu A. S., Gong Z., Muzumdar R., Pak S. C., Silverman G. A., Bahar I., Perlmutter D. H. "An analog of glibenclamide selectively enhances autophagic degradation of misfolded a1-antitrypsin Z," PLoS One.


Pei F., Li H., Henderson M. J., Titus S. A., Jadhav A., Simeonov A., Çobanoğlu M.C., Mousavi S. H., Shun T., McDermott L., Iyer P, Fioravanti M., Carlisle D., Friedlander R. M., Bahar I., Taylor D. L., Lezon T. R., Stern A. M., Schurdak M. E. "Connecting Neuronal Cell Protective Pathways and Drug Combinations in a Huntington's Disease Model through the Application of Quantitative Systems Pharmacology," Scientific Reports.


Wise* A. and Çobanoğlu* M. C. "Predicting Targeted Cancer Therapeutics," bioRxiv.


Çobanoğlu, M. C., Oltvai, Z. N., Taylor, D. L. and Bahar, I. "BalestraWeb: efficient online evaluation of drug-target interactions," Bioinformatics.

Cheng M. H., Block E., Hu F., Çobanoğlu M. C., Sorkin A., and Bahar I. "Insights into the Modulation of Dopamine Transporter Function by Amphetamine, Orphenadrine, and Cocaine Binding," Frontiers in Neurology.


O'Reilly* L. P., Long* O. S., Çobanoğlu* M. C., Benson J. A., Luke C. J., Miedel M. T., Hale P., Perlmutter D. H., Bahar I., Silverman G. A. and Pak S. C. "A genome-wide RNAi screen identifies potential drug targets in a C. elegans model of α1-antitrypsin deficiency," Human Molecular Genetics.


Çobanoğlu, M. C., Liu, C., Hu, F., Oltvai, Z. N. and Bahar, I. "Predicting drug-target interactions using probabilistic matrix factorization," Journal of Chemical Information Modeling.

Cayli, M., Çobanoğlu, M. C. and Balcisoy, S. "GlyphLink: An interactive visualization approach for semantic graphs," Journal of Visual Languages and Computing.


Kim H., Bernard M. E., Farkas A., Goff J., Kalash R., Houghton F., Shields D., Franicola D., Dixon T., Zhang X., Epperly M., Wang H., Çobanoğlu M. C., Greenberger J. S., "Ionizing irradiation protection and mitigation of murine cells by carbamazepine is p53 and autophagy independent," In Vivo.


Çobanoğlu, M. C., Saygin, Y. and Sezerman, U. "Classification of GPCRs using family specific motifs," IEEE/ACM Transactions in Computational Biology and Bioinformatics.


Çobanoğlu, M. C., Sezerman, U. and Karabulut, N. P. "Determining the ligand-specific regions of peptide-binding G-Protein Coupled Receptors," in Health Informatics and Bioinformatics (HIBIT).


Çobanoğlu, M. C., Kindiroglu, A. A. and Balcisoy, S. "Comparison of mobile device navigation information display alternatives from the cognitive load perspective," in International Conference on Engineering Psychology and Cognitive Ergonomics.